99 Best Restaurants in Japan

You'll enjoy pâtisserie perfection at this tiny traditional Okinawan house on Sesoko Island. Relax with a delicious coffee, a macaron, or chou à la crème as you listen to the cicadas. Vincent, the maître pâtissier, worked in France and then Tokyo, but chose to raise a family in Okinawa. The locals now enjoy the gastronomic finery of Paris from the tropics!

Ramen is the quintessential Japanese fast food—thick noodles in a bowl of savory broth topped with sliced grilled chashu (pork loin)—and each neighborhood in Tokyo has its go-to ramen restaurant. In Ebisu, near Shibuya, the hands-down favorite is this branch of Afuri, where you choose and pay for your ramen at a machine, find a seat, and hand over your payment ticket to the cooks, who prepare your ramen then and there. There's limited seating, and the a line of customers might extend down the street, but the ramen is worth it. The signature ramen here is yuzu shio (citron and salt), but there are other options, including a vegan version.

Just south of the Shinjuku station, on a basement food level of Shinjuku's Lumine I department store, this branch of a ramen-house chain serves its noodles with a broth that has hints of citrus, turning what can be a heavy dish into something more refreshing (and even free of meat if you like).

An outpost of a New Zealand roastery, this small, friendly café serves excellent espressos, flat whites, and cappuccinos, plus simple snacks like cookies and toasted sandwiches. It occupies a repurposed wooden warehouse with indoor seating, but, if the weather is nice, grab a to-go drink and a slice of banana cake and walk a few minutes east to Kiba Park, a lovely green spot to while away an hour.

Situated along the monzen-machi approach to Jindai-ji temple, this traditional-looking spot has its own spin on soba dishes. Here, you don’t get soba noodles, but rather "soba bread"—basically, a steamed bun made with buckwheat (soba) flour, sugar, and rice flour that comes with your choice of fillings consisting of sweet red bean paste (anko), mustard greens (takana), daikon radish, or the very nontraditional keema, or mince-meat curry.

After a hearty bowl of pho or a plate of gapao rice (fried rice mixed with ground meat and usually served with a fried egg on top), relax in one of the many hammocks and enjoy the stunning views. The presentation of the dishes and location are Insta-worthy. Located just down the road from Pizza in the Sky, access here is best by rental car or taxi. 

Located near the shops of Kappabashi-dori, the counter-only Aun specializes in tantanmen (tantan ramen), a Japanese take on spicy Sichuan dandan noodles. The lip-numbing dish, which routinely score high marks from reviewers, can be ordered here with spice levels that range from gentle to extreme.

Look for the cute neon bear sign to find what is possibly the neighborhood's best coffee shop, since, aside from some branded merchandise, coffee is the only thing that's sold. It's a tiny, low-key place with a simple design, including old wooden benches that make the place feel as if it's both in the now and from long ago.

Many long lines outside Shibuya's eateries are more about trendiness than quality, but Beard Papa makes a wide variety of genuinely good cream puffs. Pick up a single or a six-pack of freshly made pastries. It's in the underground Shibuchika shopping arcade, which is located roughly beneath the main crossing; head down some stairs, and follow the aromas of vanilla and butter.

This German bakery serves cakes and cookies that are surprisingly authentic—the baker trained in Germany. There are a few small tables outside, and cozy tables inside where you can enjoy coffee and cakes before resuming your tour. Many Japanese who visit from other parts of the country bring back the bakery's butter cookies as souvenirs.

While strolling down Naha's Kokusai-dori, stop by one of the island's iconic Blue Seal ice cream shops. "Born in America, Raised in Okinawa," Blue Seal combines American soft serve with Okinawan flavors such as beni imo (purple sweet potato), ube (mountain yam), or brown sugar. If you're desperate for a midnight snack, you can also find Blue Seal ice creams at any 24-hour convenience store.

On the road to Kiyomizu-dera, a wooden archway plastered with senja-fuda (name cards pilgrims affix on the entryways to shrines and temples) is the entry to this charming courtyard teahouse that opened in 1910. The specialties here are amazake, a sweet, nonalcoholic sake often served hot with a touch of ginger, and warabimochi rice cakes. The interior is adorned with an eclectic collection of kites and folk dolls.

This Australian-style café near Coredo Muromachi is a casual hangout serving potent espressos and milky flat whites. For a quick bite to eat, try a meat pie, or stop by for the money-saving breakfast, which features a coffee and toasted sandwich for ¥650.

In business since 1948, Café de l'Ambre is a legendary haunt for Tokyo's coffee aficionados. The retro decor provides a snapshot of an older Tokyo, and the caffeine-fix options include a dozen or so single-origin beans, including some that have been aged for years.

Associated with the funky clothing shop just around the corner and part of an international chain, this bright, open café serves high-quality coffee, cakes, snacks, and gelato. It also has some Kitsuné-branded goods on hand.

Perched on the Hope Hills area of Nakijin, Cafe Kokuu serves delicious Japanese and Okinawan cuisine in an elegant wooden building with stunning views of the countryside and ocean. All dishes are created with organic wild and farm-grown vegetables from the Yambaru region. Food is served only between 11:30 am and 4 pm.

Located on a quiet backstreet just a short walk south of Horyu-ji's Great Eastern Gate, this low-key yet stylish café offers delicious lunch sets, including very local specialties such as tatsuta-age (a type of fried chicken) and deep-fried ofu (steamed wheat gluten). The café also has its own woodwork studio and shop, with a number of robot-themed wooden toys on display.

Stop by and watch specialty donuts being fried before your eyes. They come in many flavors, and although they're on the "healthy" side, don't worry—they're still donuts. The giant cone outside reminds you that you can also get soft-serve ice cream, and there's coffee, too. Sit outside on the bench and watch the world go by.

This little café in the backstreets near Ito's main shopping arcade specializes in drinks, including green-tea latte, made with tea grown in Izu. You'll also find coffee, soda floats, and snacks like waffles and green-tea cheesecake.

This basement-level ice cream store has become a Nakano Broadway institution for its soft-serve ice cream, which comes in flavors that vary from simple vanilla to matcha (powdered green tea), horse chestnut, and ramune (a popular citrus soda flavor). The specialty is the eight-layered, 20-cm (8-inch) tokudai sofuto, or extra-large soft serve, though small cups and cones are also on the menu. Next door, is the Daily Chiko udon (thick wheat noodles) shop.

Although a classic bowl of ramen is topped with slices of pork, here it's often topped with grilled vegetables. Other specialties to try include the tsukemen, with the noodles served in one bowl and the broth into which you dip them served in another, or the chilled noodles topped with vegetables and ham in a sesame dressing. The restaurant also serves gyoza and other goodies. Despite the focus on veggies, note that the soups and sauces are not meat-free.

Quick and easy plant-based food isn't always easy to come by in Tokyo, but this small spot serves up excellent vegan fast food—namely, falafel, veggies burgers, and plant-based brownies. Most customers buy takeout, but there are a few tables, plus craft beers and coffee on the menu, if you fancy lingering. There's also a branch in Shibuya.

This delightful café-restaurant sits just south of the main drag between Harimaya-bashi and the castle. Choose a table by the window and people-watch on the cobbled lane, or head indoors to the quirky third-floor dining area. The cake, incidentally, is excellent.

Preparing wagashi (traditional Japanese sweets generally served with tea) since 1907, the main branch (out of six) of Fukagawa Iseya is less than a five-minute walk from Tomioka Hachiman Shrine. Popular choices include mitarashi dango (skewers of small rice balls covered in a sweet soy glaze) and daifuku (mounds of mochi filled with Hokkaido red bean paste). Unlike many other wagashi shops, Fukagawa Iseya has a small café next door.

In contrast to the expensive restaurants favored by tourists, residents seek out just-plain-folks places like this fun one. It's a late-night izakaya specializing in robata-yaki, which is to say it's a casual bar-restaurant with a charcoal grill and great selection of meat, poultry, and vegetable dishes. Here it's common to order several dishes to share. If no tables are available, find a seat at the long counter. The restaurant is two blocks north of Shijo-dori in the heart of Gion. Most dishes are ¥390, the drinks ¥450. The friendly men who work here enjoy using their broken English with tourists.

Amid a sea of dilapidated buildings, thin-crust pizza specialist Garage 50 stands out for its retro camper van equipped with a brick-oven. Numerous toppings—from seafood to ham or chorizo—are available, and all the pies cost the same. The tomato sauce and wheat are imported from Italy, adding an extra layer of authenticity to the no-frills eatery. Seating is limited and all of it is outside, but takeout orders are also possible.